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Systematic evaluation of transcript normalization methods and quantification pipelines across long-read sequencing platforms

Long-read RNA sequencing (lrRNA-seq) has transformed transcriptomics by enabling full-length isoform resolution, yet transcript quantification remains confounded by platform-dependent length biases and tool choices. While a quantification normalization step is common in short-read RNA-seq, this has not yet been extended to lrRNA-seq and the field lacks a systematic analysis of normalization…

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