Mitigating genotype-driven bias improves atlas-scale single-cell DNA methylome profiling
Advances in single-cell DNA methylation profiling render cohort-level, cell-type-resolved atlasing efforts increasingly feasible. In such studies, cells from multiple individuals with distinct genotypes are often analyzed in pooled experimental designs. This creates a major analytical challenge: C-to-T variants are misinterpreted as bisulfite-conversion events, thus conflating genotype and DNA…
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