From Prompt to Pipeline: A Comparative Evaluation of Large Language Model Coding Agents for Reproducible Bioinformatics Pipeline Construction
Agentic coding systems are increasingly presented as a way to reduce the engineering burden of scientific software development. Bioinformatics is a strong test case for this claim because useful pipelines must combine domain-specific analysis choices, command-line software, sample metadata, workflow orchestration, container or HPC execution, and interpretable quality-control reporting. We…
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